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Overlaying an entire warped layer would probably cause problems elsewhere in the panorama,
so we only want to overlay a small part of this layer, containing just the legs.
Activate Photoshop's Brush tool, choose a white brush of suitable size:
Activate the layer mask by clicking on the mask in the Layers palette.
Then paint on the mask using the white brush:
You can switch to Photoshop's Quick Mask mode by pressing the Backslash (\) key. This overlays
a red mask over the transparent areas of the layer mask, and thus shows you which part of the layer
mask has been edited.
Finally, choose 'Layer / Flatten image' to merge the layered file into a single image.
The Quick Tour shows how to create a panorama using PTGui.
Straightening a panorama
How to straighten a curved horizon
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